Stereopy: modeling comparative and spatiotemporal cellular heterogeneity via multi-sample spatial transcriptomics
Shuangsang Fang, Mengyang Xu, Lei Cao, Xiaobin Liu, Marija Bezulj, Liwei Tan, Zhiyuan Yuan, Yao Li, Tianyi Xia, Longyu Guo, Vladimir Kovacevic, Junhou Hui, Lidong Guo, Chao Liu, Mengnan Cheng, Li'ang Lin, Zhenbin Wen, Bojana Josic, Nikola Milicevic, Ping Qiu, Qin Lu, Yumei Li, Leying Wang, Luni Hu, Chao Zhang, Qiang Kang, Fengzhen Chen, Ziqing Deng, Junhua Li, Mei Li, Shengkang Li, Yi Zhao, Guangyi Fan, Yong Zhang, Ao Chen, Yuxiang Li, Xun Xu
Nature Communications, 16, 3741 (2025)
https://doi.org/10.1038/s41467-025-58079-9
CoDi: Contrastive distance cell type annotation for spatially resolved transcriptomics
Vladimir Kovacevic, Marija Bezulj, Nikola Milicevic, Bojana Josic, Shuangsang Fang, Yong Zhang, Junhua Li
Preprint (not peer reviewed)
https://doi.org/10.21203/rs.3.rs-4495419/v1